Obtain the latest release version from various genome annotation sources.

ensemblVersion()

gencodeVersion(organism)

refseqVersion()

flybaseVersion(dmel = FALSE)

wormbaseVersion()

Arguments

organism

character(1). Full Latin organism name (e.g. "Homo sapiens").

dmel

logical(1). Return Drosophila melanogaster genome release version.

Value

character(1). Release version.

Note

Updated 2019-10-18.

See also

Refer to the koopa package for shell variants:

  • ensembl-version.

  • flybase-version.

  • gencode-version.

  • refseq-version.

  • wormbase-version.

Examples

if (goalie::hasInternet(url = "ftp://ftp.ensembl.org/")) { ensemblVersion() }
#> [1] "98"