Strip transcript versions

stripTranscriptVersions(object, ...)

# S4 method for character
stripTranscriptVersions(object)

# S4 method for matrix
stripTranscriptVersions(object)

# S4 method for sparseMatrix
stripTranscriptVersions(object)

# S4 method for SummarizedExperiment
stripTranscriptVersions(object)

stripGeneVersions(...)

Arguments

object

Object.

...

Additional arguments.

Value

Modified object. Contains transcript identifiers without version numbers.

Note

Updated 2019-10-09.

This method is strict, and will only strip Ensembl transcript IDs beginning with "ENS".

Examples

## Ensembl (modify; contains versions) stripTranscriptVersions(c( "ENSMUST00000000001.1", "ENSMUST00000000001-1", "ENSMUST00000000001_1" ))
#> [1] "ENSMUST00000000001" "ENSMUST00000000001" "ENSMUST00000000001"
## WormBase (keep; doesn't contain versions) stripTranscriptVersions("cTel79B.1")
#> [1] "cTel79B.1"